Index

A

artificial_tree() (in module phate.tree)

D

diff_op (phate.phate.PHATE attribute)

diff_potential (phate.phate.PHATE attribute)

E

embedding (phate.PHATE attribute) (phate.phate.PHATE attribute)

F

fit() (phate.phate.PHATE method)

fit_transform() (phate.phate.PHATE method)

G

gen_dla() (in module phate.tree) get_params() (phate.phate.PHATE method)

graph (phate.PHATE attribute) (phate.phate.PHATE attribute)

K

kmeans() (in module phate.cluster)

O

optimal_t (phate.PHATE attribute) (phate.phate.PHATE attribute)

P

PHATE (class in phate.phate) phate.cluster (module)

phate.phate (module) phate.plot (module) phate.tree (module)

R

reset_mds() (phate.phate.PHATE method)

reset_potential() (phate.phate.PHATE method) rotate_scatter3d() (in module phate.plot)

S

scatter() (in module phate.plot) scatter2d() (in module phate.plot)

scatter3d() (in module phate.plot) set_params() (phate.phate.PHATE method) silhouette_score() (in module phate.cluster)

T

transform() (phate.phate.PHATE method)

X

X (phate.PHATE attribute) (phate.phate.PHATE attribute)